IL_9K0Z_142

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_142 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0658

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|1884
9K0Z|1|h|G|1885
9K0Z|1|h|A|1886
9K0Z|1|h|A|1887
9K0Z|1|h|C|1888
9K0Z|1|h|U|1889
9K0Z|1|h|C|1890
9K0Z|1|h|G|1891
9K0Z|1|h|G|1892
*
9K0Z|1|h|C|2214
9K0Z|1|h|U|2215
9K0Z|1|h|G|2216
9K0Z|1|h|U|2217
9K0Z|1|h|C|2218

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL3

Chain r

50S ribosomal protein L14