IL_9K0Z_144

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9K0Z|1|h|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_144 not in the Motif Atlas

Geometric match to IL_8CRE_084

Geometric discrepancy: 0.0841

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|C|1904
9K0Z|1|h|G|1905
9K0Z|1|h|U|1906
9K0Z|1|h|A|1907
9K0Z|1|h|A|1908
9K0Z|1|h|C|1909
*
9K0Z|1|h|G|1914
9K0Z|1|h|G|1915
9K0Z|1|h|A|1916
9K0Z|1|h|G|1917
9K0Z|1|h|A|1918
9K0Z|1|h|A|1919
9K0Z|1|h|G|1920

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain i

Large ribosomal subunit protein uL2