IL_9K0Z_153

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_153 not in the Motif Atlas

Geometric match to IL_9DFE_074

Geometric discrepancy: 0.197

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9K0Z|1|h|U|2068
9K0Z|1|h|U|2069
9K0Z|1|h|A|2070
9K0Z|1|h|A|2071
9K0Z|1|h|G|2072
*
9K0Z|1|h|U|2111
9K0Z|1|h|U|2112
9K0Z|1|h|A|2113
9K0Z|1|h|A|2114
9K0Z|1|h|G|2115

Current chains

Chain h

23S ribosomal RNA

Nearby chains