IL_9K0Z_157

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9K0Z|1|h|A|2162, 9K0Z|1|h|U|2168, 9K0Z|1|h|U|2187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_157 not in the Motif Atlas

Geometric match to IL_5J7L_319

Geometric discrepancy: 0.0902

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9K0Z|1|h|C|2158
9K0Z|1|h|G|2159
9K0Z|1|h|A|2160
9K0Z|1|h|A|2161
9K0Z|1|h|A|2162
9K0Z|1|h|U|2163
9K0Z|1|h|U|2164
9K0Z|1|h|C|2165
9K0Z|1|h|C|2166
9K0Z|1|h|U|2167
9K0Z|1|h|U|2168
9K0Z|1|h|G|2169
*
9K0Z|1|h|C|2185
9K0Z|1|h|C|2186
9K0Z|1|h|U|2187
9K0Z|1|h|G|2188

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain i

Large ribosomal subunit protein uL2