IL_9K0Z_161

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAA*UGGG

Length

7 nucleotides

Bulged bases

9K0Z|1|h|G|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_161 not in the Motif Atlas

Geometric match to IL_9DFE_082

Geometric discrepancy: 0.134

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9K0Z|1|h|C|2304
9K0Z|1|h|A|2305
9K0Z|1|h|A|2306
*
9K0Z|1|h|U|2460
9K0Z|1|h|G|2461
9K0Z|1|h|G|2462
9K0Z|1|h|G|2463

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain i

Large ribosomal subunit protein uL2