IL_9K0Z_171

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

9K0Z|1|h|U|2626

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_171 not in the Motif Atlas

Geometric match to IL_8TQX_001

Geometric discrepancy: 0.2324

The information below is about IL_8TQX_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9K0Z|1|h|C|2625
9K0Z|1|h|U|2626
9K0Z|1|h|C|2627
*
9K0Z|1|h|G|2638
9K0Z|1|h|G|2639

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein bL33A

Chain s

Large ribosomal subunit protein uL15