IL_9K0Z_176

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_176 not in the Motif Atlas

Geometric match to IL_3BNN_005

Geometric discrepancy: 0.1292

The information below is about IL_3BNN_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9K0Z|1|h|C|2685
9K0Z|1|h|U|2686
9K0Z|1|h|U|2687
*
9K0Z|1|h|A|2711
9K0Z|1|h|U|2712
9K0Z|1|h|G|2713

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain t

Large ribosomal subunit protein uL16