IL_9K0Z_177

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_177 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.1333

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9K0Z|1|h|C|2690
9K0Z|1|h|C|2691
9K0Z|1|h|A|2692
9K0Z|1|h|A|2693
9K0Z|1|h|G|2694
*
9K0Z|1|h|C|2704
9K0Z|1|h|G|2705
9K0Z|1|h|A|2706
9K0Z|1|h|C|2707
9K0Z|1|h|G|2708

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL25

Chain f

50S ribosomal protein L36

Chain t

Large ribosomal subunit protein uL16