IL_9K0Z_187

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UU*ACGG

Length

6 nucleotides

Bulged bases

9K0Z|1|h|C|2936, 9K0Z|1|h|G|2937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_187 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.0546

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9K0Z|1|h|U|2919
9K0Z|1|h|U|2920
*
9K0Z|1|h|A|2935
9K0Z|1|h|C|2936
9K0Z|1|h|G|2937
9K0Z|1|h|G|2938

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain u

Large ribosomal subunit protein bL17

Chain w

50S ribosomal protein L19