IL_9K0Z_190

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_190 not in the Motif Atlas

Geometric match to IL_7A0S_100

Geometric discrepancy: 0.303

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|G|3064
9K0Z|1|h|A|3065
9K0Z|1|h|C|3066
*
9K0Z|1|h|G|3092
9K0Z|1|h|A|3093
9K0Z|1|h|A|3094
9K0Z|1|h|C|3095

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL3

Chain u

Large ribosomal subunit protein bL17

Chain w

50S ribosomal protein L19