IL_9K10_013
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAC*GAGUGAAAGAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 9K10|1|A|G|591, 9K10|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K10_013 not in the Motif Atlas
- Geometric match to IL_8P9A_243
- Geometric discrepancy: 0.1235
- The information below is about IL_8P9A_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
9K10|1|A|G|569
9K10|1|A|U|570
9K10|1|A|A|571
9K10|1|A|C|572
*
9K10|1|A|G|583
9K10|1|A|A|584
9K10|1|A|G|585
9K10|1|A|U|586
9K10|1|A|G|587
9K10|1|A|A|588
9K10|1|A|A|589
9K10|1|A|A|590
9K10|1|A|G|591
9K10|1|A|A|592
9K10|1|A|G|593
9K10|1|A|U|594
9K10|1|A|A|595
9K10|1|A|C|596
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L23
- Chain V
- Large ribosomal subunit protein uL24
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