IL_9K10_014

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_014 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9K10|1|A|A|623
9K10|1|A|G|624
9K10|1|A|A|625
9K10|1|A|G|626
*
9K10|1|A|U|646
9K10|1|A|G|647
9K10|1|A|A|648
9K10|1|A|U|649

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20