IL_9K10_027

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

9K10|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_027 not in the Motif Atlas

Geometric match to IL_9DFE_023

Geometric discrepancy: 0.3128

The information below is about IL_9DFE_023

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9K10|1|A|U|959
9K10|1|A|G|960
9K10|1|A|U|961
*
9K10|1|A|A|1048
9K10|1|A|G|1049
9K10|1|A|A|1050
9K10|1|A|G|1051

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L30