IL_9K10_033

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_033 not in the Motif Atlas

Geometric match to IL_8CRE_412

Geometric discrepancy: 0.1849

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9K10|1|A|G|986
9K10|1|A|A|987
9K10|1|A|U|988
*
9K10|1|A|A|1020
9K10|1|A|G|1021
9K10|1|A|C|1022

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25