IL_9K10_034

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_034 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3266

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9K10|1|A|C|991
9K10|1|A|C|992
9K10|1|A|G|993
9K10|1|A|A|994
9K10|1|A|U|995
9K10|1|A|G|996
*
9K10|1|A|C|1012
9K10|1|A|U|1013
9K10|1|A|G|1014
9K10|1|A|A|1015
9K10|1|A|C|1016
9K10|1|A|G|1017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25