3D structure

PDB id
9K10 (explore in PDB, NAKB, or RNA 3D Hub)
Description
EF-G2 bound 50S ribosome subunit complex of M. smegmatis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAAAAG*CGAUAAUGUAGCGGGGC
Length
24 nucleotides
Bulged bases
9K10|1|A|U|1245, 9K10|1|A|U|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9K10_042 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.123
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9K10|1|A|G|1142
9K10|1|A|G|1143
9K10|1|A|A|1144
9K10|1|A|A|1145
9K10|1|A|A|1146
9K10|1|A|A|1147
9K10|1|A|G|1148
*
9K10|1|A|C|1242
9K10|1|A|G|1243
9K10|1|A|A|1244
9K10|1|A|U|1245
9K10|1|A|A|1246
9K10|1|A|A|1247
9K10|1|A|U|1248
9K10|1|A|G|1249
9K10|1|A|U|1250
9K10|1|A|A|1251
9K10|1|A|G|1252
9K10|1|A|C|1253
9K10|1|A|G|1254
9K10|1|A|G|1255
9K10|1|A|G|1256
9K10|1|A|G|1257
9K10|1|A|C|1258

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein bL37
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L13
Chain N
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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