IL_9K10_046
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 9K10|1|A|A|1206
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K10_046 not in the Motif Atlas
- Geometric match to IL_5D8H_003
- Geometric discrepancy: 0.241
- The information below is about IL_5D8H_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
9K10|1|A|G|1205
9K10|1|A|A|1206
9K10|1|A|G|1207
9K10|1|A|U|1208
9K10|1|A|G|1209
*
9K10|1|A|C|1218
9K10|1|A|U|1219
9K10|1|A|C|1220
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L11
- Chain f
- 50S ribosomal protein L36
Coloring options: