IL_9K10_070

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9K10|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_070 not in the Motif Atlas

Geometric match to IL_8CRE_084

Geometric discrepancy: 0.0796

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9K10|1|A|C|1904
9K10|1|A|G|1905
9K10|1|A|U|1906
9K10|1|A|A|1907
9K10|1|A|A|1908
9K10|1|A|C|1909
*
9K10|1|A|G|1914
9K10|1|A|G|1915
9K10|1|A|A|1916
9K10|1|A|G|1917
9K10|1|A|A|1918
9K10|1|A|A|1919
9K10|1|A|G|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2