IL_9K10_076

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGAAGGUUAAGAGGACCCGUUAACU*GGUGAAGCGGAGAAUUUAAGCCCCAG

Length

53 nucleotides

Bulged bases

9K10|1|A|G|2067, 9K10|1|A|U|2082, 9K10|1|A|G|2115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|C|2060
9K10|1|A|U|2061
9K10|1|A|G|2062
9K10|1|A|G|2063
9K10|1|A|A|2064
9K10|1|A|A|2065
9K10|1|A|G|2066
9K10|1|A|G|2067
9K10|1|A|U|2068
9K10|1|A|U|2069
9K10|1|A|A|2070
9K10|1|A|A|2071
9K10|1|A|G|2072
9K10|1|A|A|2073
9K10|1|A|G|2074
9K10|1|A|G|2075
9K10|1|A|A|2076
9K10|1|A|C|2077
9K10|1|A|C|2078
9K10|1|A|C|2079
9K10|1|A|G|2080
9K10|1|A|U|2081
9K10|1|A|U|2082
9K10|1|A|A|2083
9K10|1|A|A|2084
9K10|1|A|C|2085
9K10|1|A|U|2086
*
9K10|1|A|G|2096
9K10|1|A|G|2097
9K10|1|A|U|2098
9K10|1|A|G|2099
9K10|1|A|A|2100
9K10|1|A|A|2101
9K10|1|A|G|2102
9K10|1|A|C|2103
9K10|1|A|G|2104
9K10|1|A|G|2105
9K10|1|A|A|2106
9K10|1|A|G|2107
9K10|1|A|A|2108
9K10|1|A|A|2109
9K10|1|A|U|2110
9K10|1|A|U|2111
9K10|1|A|U|2112
9K10|1|A|A|2113
9K10|1|A|A|2114
9K10|1|A|G|2115
9K10|1|A|C|2116
9K10|1|A|C|2117
9K10|1|A|C|2118
9K10|1|A|C|2119
9K10|1|A|A|2120
9K10|1|A|G|2121

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2