IL_9K10_080

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAA*UGGG

Length

7 nucleotides

Bulged bases

9K10|1|A|G|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_080 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.097

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9K10|1|A|C|2304
9K10|1|A|A|2305
9K10|1|A|A|2306
*
9K10|1|A|U|2460
9K10|1|A|G|2461
9K10|1|A|G|2462
9K10|1|A|G|2463

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain Y

50S ribosomal protein L28