IL_9K2Z_001

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UAA*UAG

Length

6 nucleotides

Bulged bases

9K2Z|1|B|A|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K2Z_001 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.1942

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9K2Z|1|B|U|6
9K2Z|1|B|A|7
9K2Z|1|B|A|8
*
9K2Z|1|B|U|94
9K2Z|1|B|A|95
9K2Z|1|B|G|96

Current chains

Chain B

Omega RNA

Nearby chains