IL_9K2Z_006

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

9K2Z|1|B|U|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K2Z_006 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.1963

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9K2Z|1|B|C|120
9K2Z|1|B|U|121
*
9K2Z|1|B|A|132
9K2Z|1|B|U|133
9K2Z|1|B|G|134

Current chains

Chain B

Omega RNA

Nearby chains