IL_9K32_001

3D structure

PDB id

9K32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UAUA*UG

Length

6 nucleotides

Bulged bases

9K32|1|B|U|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K32_001 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3107

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9K32|1|B|U|66
9K32|1|B|A|67
9K32|1|B|U|68
9K32|1|B|A|69
*
9K32|1|B|U|146
9K32|1|B|G|147

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

HNH nuclease domain-containing protein