IL_9K8O_002

3D structure

PDB id

9K8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a short zinc-dependent DNAzyme minGAA

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CACC*(OMG)AAGG

Length

9 nucleotides

Bulged bases

9K8O|1|E|DC|7, 9K8O|1|F|A|19

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75460.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9K8O|1|E|DC|5
9K8O|1|E|DA|6
9K8O|1|E|DC|7
9K8O|1|E|DC|8
*
9K8O|1|F|OMG|18
9K8O|1|F|A|19
9K8O|1|F|A|20
9K8O|1|F|DG|21
9K8O|1|F|DG|22

Current chains

Chain E

DNAzyme minGAA, catalytic strand

Chain F

substrate strand for DNAzyme minGAA

Nearby chains

Chain D

substrate strand for DNAzyme minGAA