IL_9KDT_010

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CACUCC*GCUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|168
9KDT|1|L5|A|169
9KDT|1|L5|C|170
9KDT|1|L5|U|171
9KDT|1|L5|C|172
9KDT|1|L5|C|173
*
9KDT|1|L5|G|262
9KDT|1|L5|C|263
9KDT|1|L5|U|264
9KDT|1|L5|C|265
9KDT|1|L5|G|266

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

Large ribosomal subunit protein uL29