IL_9KDT_015

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9KDT|1|L5|G|408, 9KDT|1|L5|G|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|386
9KDT|1|L5|A|387
9KDT|1|L5|A|388
9KDT|1|L5|C|389
*
9KDT|1|L5|G|400
9KDT|1|L5|A|401
9KDT|1|L5|G|402
9KDT|1|L5|U|403
9KDT|1|L5|U|404
9KDT|1|L5|C|405
9KDT|1|L5|A|406
9KDT|1|L5|A|407
9KDT|1|L5|G|408
9KDT|1|L5|A|409
9KDT|1|L5|G|410
9KDT|1|L5|G|411
9KDT|1|L5|G|412
9KDT|1|L5|C|413

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

Large ribosomal subunit protein uL22

Chain LY

Large ribosomal subunit protein uL24

Chain Ll

Large ribosomal subunit protein eL39-like

Chain Z

Nascent peptide