IL_9KDT_022

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUUCAAC*GCGCACUU

Length

15 nucleotides

Bulged bases

9KDT|1|L5|U|466, 9KDT|1|L5|C|695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|A|465
9KDT|1|L5|U|466
9KDT|1|L5|U|467
9KDT|1|L5|C|468
9KDT|1|L5|A|469
9KDT|1|L5|A|470
9KDT|1|L5|C|471
*
9KDT|1|L5|G|690
9KDT|1|L5|C|691
9KDT|1|L5|G|692
9KDT|1|L5|C|693
9KDT|1|L5|A|694
9KDT|1|L5|C|695
9KDT|1|L5|U|696
9KDT|1|L5|U|697

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

Large ribosomal subunit protein eL28