IL_9KDT_032

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9KDT|1|L5|G|756, 9KDT|1|L5|C|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|753
9KDT|1|L5|A|754
9KDT|1|L5|A|755
9KDT|1|L5|G|756
9KDT|1|L5|G|757
9KDT|1|L5|U|758
9KDT|1|L5|G|759
9KDT|1|L5|G|760
*
9KDT|1|L5|U|811
9KDT|1|L5|G|812
9KDT|1|L5|U|813
9KDT|1|L5|U|814
9KDT|1|L5|A|815
9KDT|1|L5|C|816
9KDT|1|L5|A|817
9KDT|1|L5|G|818
9KDT|1|L5|C|819

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20