IL_9KDT_059

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

9KDT|1|L5|G|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|1542
9KDT|1|L5|C|1543
9KDT|1|L5|G|1544
9KDT|1|L5|A|1545
9KDT|1|L5|A|1546
9KDT|1|L5|U|1547
*
9KDT|1|L5|A|1589
9KDT|1|L5|A|1590
9KDT|1|L5|A|1591
9KDT|1|L5|C|1592

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Large ribosomal subunit protein uL16-like

Chain LT

Large ribosomal subunit protein eL21