IL_9KDT_065

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

9KDT|1|L5|U|1873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|U|1708
9KDT|1|L5|U|1709
9KDT|1|L5|A|1710
9KDT|1|L5|A|1711
9KDT|1|L5|G|1712
*
9KDT|1|L5|C|1870
9KDT|1|L5|C|1871
9KDT|1|L5|A|1872
9KDT|1|L5|U|1873
9KDT|1|L5|A|1874

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LQ

Large ribosomal subunit protein eL18

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33