IL_9KDT_066

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|1714
9KDT|1|L5|G|1715
9KDT|1|L5|C|1716
9KDT|1|L5|C|1717
9KDT|1|L5|C|1718
9KDT|1|L5|G|1719
9KDT|1|L5|A|1720
9KDT|1|L5|U|1721
*
9KDT|1|L5|G|1867
9KDT|1|L5|G|1868

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LO

Large ribosomal subunit protein uL13

Chain LS

Large ribosomal subunit protein eL20

Chain Lf

Large ribosomal subunit protein eL33