IL_9KDT_070
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9KDT|1|L5|C|1738, 9KDT|1|L5|A|1844, 9KDT|1|L5|U|1847, 9KDT|1|L5|G|1848
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|G|1736
9KDT|1|L5|A|1737
9KDT|1|L5|C|1738
9KDT|1|L5|C|1739
9KDT|1|L5|C|1740
9KDT|1|L5|C|1741
9KDT|1|L5|A|1742
9KDT|1|L5|G|1743
9KDT|1|L5|A|1744
9KDT|1|L5|A|1745
9KDT|1|L5|A|1746
9KDT|1|L5|A|1747
*
9KDT|1|L5|U|1841
9KDT|1|L5|G|1842
9KDT|1|L5|A|1843
9KDT|1|L5|A|1844
9KDT|1|L5|A|1845
9KDT|1|L5|A|1846
9KDT|1|L5|U|1847
9KDT|1|L5|G|1848
9KDT|1|L5|G|1849
9KDT|1|L5|A|1850
9KDT|1|L5|U|1851
9KDT|1|L5|G|1852
9KDT|1|L5|G|1853
9KDT|1|L5|C|1854
9KDT|1|L5|G|1855
9KDT|1|L5|C|1856
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LI
- Large ribosomal subunit protein uL16-like
- Chain LO
- Large ribosomal subunit protein uL13
- Chain Lf
- Large ribosomal subunit protein eL33
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: