IL_9KDT_079

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

9KDT|1|L5|A|2269, 9KDT|1|L5|A|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|2203
9KDT|1|L5|U|2204
9KDT|1|L5|G|2205
9KDT|1|L5|A|2206
9KDT|1|L5|G|2207
*
9KDT|1|L5|C|2266
9KDT|1|L5|G|2267
9KDT|1|L5|A|2268
9KDT|1|L5|A|2269
9KDT|1|L5|A|2270
9KDT|1|L5|G|2271

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

Large ribosomal subunit protein uL2

Chain Lg

Large ribosomal subunit protein eL34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39-like