IL_9KDT_082

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

9KDT|1|L5|G|2301, 9KDT|1|L5|U|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|2299
9KDT|1|L5|A|2300
9KDT|1|L5|G|2301
9KDT|1|L5|U|2302
9KDT|1|L5|G|2303
9KDT|1|L5|G|2304
*
9KDT|1|L5|C|2526
9KDT|1|L5|G|2527
9KDT|1|L5|C|2528

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

Large ribosomal subunit protein eL38