IL_9KDT_091

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|A|2586
9KDT|1|L5|A|2587
9KDT|1|L5|C|2588
9KDT|1|L5|A|2589
9KDT|1|L5|A|2590
9KDT|1|L5|U|2591
9KDT|1|L5|G|2592
*
9KDT|1|L5|C|3507
9KDT|1|L5|U|3508
9KDT|1|L5|A|3509
9KDT|1|L5|U|3510

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22

Chain Ld

Large ribosomal subunit protein eL31