IL_9KDT_099

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAUC*GAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|A|3286
9KDT|1|L5|A|3287
9KDT|1|L5|U|3288
9KDT|1|L5|C|3289
*
9KDT|1|L5|G|3486
9KDT|1|L5|A|3487
9KDT|1|L5|U|3488
9KDT|1|L5|U|3489

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Ln

Small ribosomal subunit protein eS32

Chain S2

Small subunit ribosomal RNA; SSU rRNA