IL_9KDT_101

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9KDT|1|L5|A|3320, 9KDT|1|L5|U|3336, 9KDT|1|L5|C|3340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|3317
9KDT|1|L5|G|3318
9KDT|1|L5|A|3319
9KDT|1|L5|A|3320
9KDT|1|L5|G|3321
9KDT|1|L5|G|3322
*
9KDT|1|L5|U|3334
9KDT|1|L5|G|3335
9KDT|1|L5|U|3336
9KDT|1|L5|U|3337
9KDT|1|L5|G|3338
9KDT|1|L5|A|3339
9KDT|1|L5|C|3340
9KDT|1|L5|G|3341

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA