IL_9KDT_141

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9KDT|1|L5|A|4361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|4333
9KDT|1|L5|A|4334
9KDT|1|L5|U|4335
9KDT|1|L5|U|4336
9KDT|1|L5|A|4337
9KDT|1|L5|U|4338
*
9KDT|1|L5|A|4358
9KDT|1|L5|G|4359
9KDT|1|L5|A|4360
9KDT|1|L5|A|4361
9KDT|1|L5|U|4362
9KDT|1|L5|C|4363

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein