IL_9KDT_146

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9KDT|1|L5|C|4411, 9KDT|1|L5|C|4412, 9KDT|1|L5|A|4418, 9KDT|1|L5|G|4516, 9KDT|1|L5|C|4517, 9KDT|1|L5|G|4519, 9KDT|1|L5|A|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|4410
9KDT|1|L5|C|4411
9KDT|1|L5|C|4412
9KDT|1|L5|C|4413
9KDT|1|L5|G|4414
9KDT|1|L5|G|4415
9KDT|1|L5|A|4416
9KDT|1|L5|U|4417
9KDT|1|L5|A|4418
9KDT|1|L5|G|4419
*
9KDT|1|L5|U|4515
9KDT|1|L5|G|4516
9KDT|1|L5|C|4517
9KDT|1|L5|G|4518
9KDT|1|L5|G|4519
9KDT|1|L5|A|4520
9KDT|1|L5|G|4521
9KDT|1|L5|A|4522
9KDT|1|L5|G|4523

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LH

Large ribosomal subunit protein uL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain LS

Large ribosomal subunit protein eL20