IL_9KDT_149

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGUGCGG*CCGCCC

Length

13 nucleotides

Bulged bases

9KDT|1|L5|U|4546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|4544
9KDT|1|L5|G|4545
9KDT|1|L5|U|4546
9KDT|1|L5|G|4547
9KDT|1|L5|C|4548
9KDT|1|L5|G|4549
9KDT|1|L5|G|4550
*
9KDT|1|L5|C|4563
9KDT|1|L5|C|4564
9KDT|1|L5|G|4565
9KDT|1|L5|C|4566
9KDT|1|L5|C|4567
9KDT|1|L5|C|4568

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14