IL_9KDT_158

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KDT_158 not in the Motif Atlas

Geometric match to IL_8QYX_166

Geometric discrepancy: 0.1033

The information below is about IL_8QYX_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.2

Basepair signature

cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9KDT|1|L7|G|21
9KDT|1|L7|A|22
9KDT|1|L7|A|23
9KDT|1|L7|C|24
9KDT|1|L7|G|25
9KDT|1|L7|C|26
9KDT|1|L7|G|27
*
9KDT|1|L7|C|52
9KDT|1|L7|U|53
9KDT|1|L7|A|54
9KDT|1|L7|A|55
9KDT|1|L7|G|56
9KDT|1|L7|C|57

Current chains

Chain L7

Mus musculus 5S ribosomal RNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5