IL_9KDT_178
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AAUACAG*CCUGUAAUU
- Length
- 16 nucleotides
- Bulged bases
- 9KDT|1|S2|U|554, 9KDT|1|S2|A|555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|A|529
9KDT|1|S2|A|530
9KDT|1|S2|U|531
9KDT|1|S2|A|532
9KDT|1|S2|C|533
9KDT|1|S2|A|534
9KDT|1|S2|G|535
*
9KDT|1|S2|C|550
9KDT|1|S2|C|551
9KDT|1|S2|U|552
9KDT|1|S2|G|553
9KDT|1|S2|U|554
9KDT|1|S2|A|555
9KDT|1|S2|A|556
9KDT|1|S2|U|557
9KDT|1|S2|U|558
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: