IL_9KDT_193

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|G|929
9KDT|1|S2|G|930
9KDT|1|S2|C|931
9KDT|1|S2|C|932
*
9KDT|1|S2|G|1011
9KDT|1|S2|A|1012
9KDT|1|S2|A|1013
9KDT|1|S2|U|1014

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SB

Small ribosomal subunit protein eS1

Chain SN

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein eS27