IL_9KDT_197

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|A|1043
9KDT|1|S2|G|1044
9KDT|1|S2|G|1045
9KDT|1|S2|U|1046
9KDT|1|S2|U|1047
9KDT|1|S2|C|1048
*
9KDT|1|S2|G|1072
9KDT|1|S2|U|1073
9KDT|1|S2|U|1074

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LA

Large ribosomal subunit protein uL2

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

Small ribosomal subunit protein eS26