IL_9KDT_206

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9KDT|1|S2|C|1216, 9KDT|1|S2|C|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|A|1215
9KDT|1|S2|C|1216
9KDT|1|S2|C|1217
9KDT|1|S2|A|1218
*
9KDT|1|S2|U|1682
9KDT|1|S2|C|1683
9KDT|1|S2|C|1684
9KDT|1|S2|C|1685
9KDT|1|S2|U|1686

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain S6

Transfer RNA; tRNA

Chain S7

Transfer RNA; tRNA

Chain SQ

Small ribosomal subunit protein uS9

Chain Sc

Small ribosomal subunit protein eS28