IL_9KDT_210

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCCC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|G|1271
9KDT|1|S2|C|1272
9KDT|1|S2|C|1273
9KDT|1|S2|C|1274
*
9KDT|1|S2|G|1511
9KDT|1|S2|U|1512
9KDT|1|S2|C|1513
9KDT|1|S2|C|1514

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14