IL_9KDT_216

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9KDT|1|S2|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|C|1338
9KDT|1|S2|G|1339
*
9KDT|1|S2|C|1489
9KDT|1|S2|A|1490
9KDT|1|S2|G|1491

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SC

Small ribosomal subunit protein uS5

Chain SD

Small ribosomal subunit protein uS3

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14