IL_9KDT_224
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 9KDT|1|S2|G|1553, 9KDT|1|S2|A|1557, 9KDT|1|S2|C|1558, 9KDT|1|S2|A|1581, 9KDT|1|S2|C|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|G|1551
9KDT|1|S2|U|1552
9KDT|1|S2|G|1553
9KDT|1|S2|C|1554
9KDT|1|S2|C|1555
9KDT|1|S2|U|1556
9KDT|1|S2|A|1557
9KDT|1|S2|C|1558
9KDT|1|S2|C|1559
*
9KDT|1|S2|G|1578
9KDT|1|S2|U|1579
9KDT|1|S2|A|1580
9KDT|1|S2|A|1581
9KDT|1|S2|C|1582
9KDT|1|S2|C|1583
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- Small ribosomal subunit protein eS10
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14
Coloring options: