IL_9KDT_227

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|G|1703
9KDT|1|S2|C|1704
9KDT|1|S2|C|1705
9KDT|1|S2|C|1706
*
9KDT|1|S2|G|1830
9KDT|1|S2|U|1831
9KDT|1|S2|A|1832
9KDT|1|S2|A|1833
9KDT|1|S2|C|1834

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

Small ribosomal subunit protein eS32

Chain S7

Transfer RNA; tRNA

Chain Sx

RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')