IL_9KDT_236

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGGAUCG*UGAGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|C|1743
9KDT|1|S2|G|1744
9KDT|1|S2|G|1745
9KDT|1|S2|A|1746
9KDT|1|S2|U|1747
9KDT|1|S2|C|1748
9KDT|1|S2|G|1749
*
9KDT|1|S2|U|1787
9KDT|1|S2|G|1788
9KDT|1|S2|A|1789
9KDT|1|S2|G|1790
9KDT|1|S2|A|1791
9KDT|1|S2|A|1792
9KDT|1|S2|G|1793

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain LW

Large ribosomal subunit protein eL24

Chain SG

Small ribosomal subunit protein eS6

Chain SI

Small ribosomal subunit protein eS8